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epigenomix

Epigenetic and gene transcription data normalization and integration with mixture models

Bioconductor version: 3.23 · Package version: 1.52.0

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epigenomix")

Details

MaintainerHans-Ulrich Klein <h.klein@uni-muenster.de>
AuthorHans-Ulrich Klein, Martin Schaefer
LicenseLGPL-3
Downloads rank590
Source branchRELEASE_3_23
biocViewsChIPSeq, Classification, DifferentialExpression, GeneExpression, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageepigenomix_1.52.0.tar.gz
Windows binary (x86_64)epigenomix_1.52.0.zip
macOS binary (arm64)epigenomix_1.52.0.tgz
macOS binary (x86_64)epigenomix_1.52.0.tgz
Dependencies

Depends: R (>= 3.5.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment

Imports: BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray