coRdon
Codon Usage Analysis and Prediction of Gene Expressivity
Bioconductor version: 3.23 · Package version: 1.30.0
Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("coRdon") Details
| Maintainer | Anamaria Elek <anamariaelek@gmail.com> |
| Author | Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/BioinfoHR/coRdon |
| Bug Reports | https://github.com/BioinfoHR/coRdon/issues |
| Downloads rank | 678 |
| Source branch | RELEASE_3_23 |
| biocViews | BiomedicalInformatics, GeneExpression, GenePrediction, GeneSetEnrichment, Genetics CellBiology, ImmunoOncology, KEGG, Metagenomics, Pathways, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | coRdon_1.30.0.tar.gz |
| Windows binary (x86_64) | coRdon_1.30.0.zip |
| macOS binary (arm64) | coRdon_1.30.0.tgz |
| macOS binary (x86_64) | coRdon_1.30.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: methods, stats, utils, Biostrings, Biobase, dplyr, stringr, purrr, ggplot2, data.table
Reverse dependencies
Imports Me (1): vhcub