bigmelon
Illumina methylation array analysis for large experiments
Bioconductor version: 3.23 · Package version: 1.38.0
Methods for working with Illumina arrays using gdsfmt.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bigmelon")Details
| Maintainer | Leonard C. Schalkwyk <lschal@essex.ac.uk> |
| Author | Tyler J. Gorrie-Stone [aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [cre, aut] |
| License | GPL-3 |
| Downloads rank | 573 |
| Source branch | RELEASE_3_23 |
| biocViews | CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | bigmelon_1.38.0.tar.gz |
| Windows binary (x86_64) | bigmelon_1.38.0.zip |
| macOS binary (arm64) | bigmelon_1.38.0.tgz |
| macOS binary (x86_64) | bigmelon_1.38.0.tgz |
Dependencies
Depends: R (>= 3.3), wateRmelon (>= 1.25.0), gdsfmt (>= 1.0.4), methods, minfi (>= 1.21.0), Biobase, methylumi
Imports: stats, utils, GEOquery, graphics, BiocGenerics, illuminaio
Suggests: BiocGenerics, RUnit, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter