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adSplit

Annotation-Driven Clustering

Bioconductor version: 3.23 · Package version: 1.82.0

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adSplit")

Details

MaintainerClaudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de>
AuthorClaudio Lottaz, Joern Toedling
LicenseGPL (>= 2)
URLhttp://compdiag.molgen.mpg.de/software/adSplit.shtml
Downloads rank695
Source branchRELEASE_3_23
biocViewsClustering, Microarray, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageadSplit_1.82.0.tar.gz
Windows binary (x86_64)adSplit_1.82.0.zip
macOS binary (arm64)adSplit_1.82.0.tgz
macOS binary (x86_64)adSplit_1.82.0.tgz
Dependencies

Depends: R (>= 2.1.0), methods (>= 2.1.0)

Imports: AnnotationDbi, Biobase (>= 1.5.12), cluster (>= 1.9.1), GO.db (>= 1.8.1), graphics, grDevices, KEGGREST (>= 1.30.1), multtest (>= 1.6.0), stats (>= 2.1.0)

Suggests: golubEsets (>= 1.0), vsn (>= 1.5.0), hu6800.db (>= 1.8.1)