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TTMap

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: 3.23 · Package version: 1.34.0

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TTMap")

Details

MaintainerRachel Jeitziner <rachel.jeitziner@epfl.ch>
AuthorRachel Jeitziner
LicenseGPL-2
Downloads rank496
Source branchRELEASE_3_23
biocViewsClassification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageTTMap_1.34.0.tar.gz
Windows binary (x86_64)TTMap_1.34.0.zip
macOS binary (arm64)TTMap_1.34.0.tgz
macOS binary (x86_64)TTMap_1.34.0.tgz
Dependencies

Depends: rgl, colorRamps

Imports: grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase

Suggests: BiocStyle, airway