Bioc2026 Registration Open!

RCX

R package implementing the Cytoscape Exchange (CX) format

Bioconductor version: 3.23 · Package version: 1.16.0

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RCX")

Details

MaintainerFlorian Auer <florian.auer@informatik.uni-augsburg.de>
AuthorFlorian Auer [aut, cre] (ORCID: <https://orcid.org/0000-0002-5320-8900>)
LicenseMIT + file LICENSE
URLhttps://github.com/frankkramer-lab/RCX
Bug Reportshttps://github.com/frankkramer-lab/RCX/issues
Downloads rank384
Source branchRELEASE_3_23
biocViewsDataImport, Network, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageRCX_1.16.0.tar.gz
Windows binary (x86_64)RCX_1.16.0.zip
macOS binary (arm64)RCX_1.16.0.tgz
macOS binary (x86_64)RCX_1.16.0.tgz
Dependencies

Depends: R (>= 4.2.0)

Imports: jsonlite, plyr, igraph, methods

Suggests: BiocStyle, testthat, knitr, rmarkdown, base64enc, graph

Reverse dependencies

Depends On Me (1): ndexr