Organism.dplyr
dplyr-based Access to Bioconductor Annotation Resources
Bioconductor version: 3.23 · Package version: 1.40.0
This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Organism.dplyr")Details
| Maintainer | Martin Morgan <martin.morgan@roswellpark.org> |
| Author | Martin Morgan [aut, cre], Daniel van Twisk [ctb], Yubo Cheng [aut] |
| License | Artistic-2.0 |
| Bug Reports | https://github.com/Bioconductor/Organism.dplyr/issues |
| Status | Deprecated |
| Downloads rank | 457 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, GenomeAnnotation, Sequencing, Software |
Documentation
Dependencies
Depends: R (>= 4.1.0), dplyr (>= 0.7.0), AnnotationFilter (>= 1.1.3)
Imports: RSQLite, S4Vectors, Seqinfo, IRanges, GenomicRanges (>= 1.61.1), GenomicFeatures (>= 1.61.4), AnnotationDbi, rlang, methods, tools, utils, BiocFileCache, DBI, dbplyr, tibble
Suggests: GenomeInfoDb, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, magick, BiocStyle, ggplot2