MEAL
Perform methylation analysis
Bioconductor version: 3.23 · Package version: 1.42.0
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MEAL") Details
| Maintainer | Xavier EscribĂ Montagut <xavier.escriba@isglobal.org> |
| Author | Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut] |
| License | Artistic-2.0 |
| Downloads rank | 648 |
| Source branch | RELEASE_3_23 |
| biocViews | DNAMethylation, Microarray, Software, WholeGenome |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MEAL_1.42.0.tar.gz |
| Windows binary (x86_64) | MEAL_1.42.0.zip |
| macOS binary (arm64) | MEAL_1.42.0.tgz |
| macOS binary (x86_64) | MEAL_1.42.0.tgz |
Dependencies
Depends: R (>= 3.6.0), Biobase, MultiDataSet
Imports: GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown, brgedata