ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: 3.23 · Package version: 1.66.0

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChromHeatMap")

Details

Maintainer	Tim F. Rayner <tfrayner@gmail.com>
Author	Tim F. Rayner
License	Artistic-2.0
Downloads rank	601
Source branch	RELEASE_3_23
biocViews	Software, Visualization

Documentation

Plotting expression data with ChromHeatMap

Download

Follow the installation instructions to use this package in your R session.

Source package	ChromHeatMap_1.66.0.tar.gz
Windows binary (x86_64)	ChromHeatMap_1.66.0.zip
macOS binary (arm64)	ChromHeatMap_1.66.0.tgz
macOS binary (x86_64)	ChromHeatMap_1.66.0.tgz

Dependencies

Depends: R (>= 2.9.0), BiocGenerics (>= 0.3.2), annotate (>= 1.20.0), AnnotationDbi (>= 1.4.0)

Imports: Biobase (>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges

Suggests: ALL, hgu95av2.db