CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Bioconductor version: 3.23 · Package version: 1.58.0
This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CellNOptR")Details
| Maintainer | Attila Gabor <attila.gabor@uni-heidelberg.de> |
| Author | Thomas Cokelaer [aut], Federica Eduati [aut], Aidan MacNamara [aut], S Schrier [ctb], Camille Terfve [aut], Enio Gjerga [ctb], Attila Gabor [cre] |
| License | GPL-3 |
| System Requirements | Graphviz version >= 2.2 |
| Downloads rank | 672 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBasedAssays, CellBiology, ImmunoOncology, Network, Pathways, Proteomics, Software, TimeCourse |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CellNOptR_1.58.0.tar.gz |
| Windows binary (x86_64) | CellNOptR_1.58.0.zip |
| macOS binary (arm64) | CellNOptR_1.58.0.tgz |
| macOS binary (x86_64) | CellNOptR_1.58.0.tgz |