Bioc2026 Registration Open!

CellMapper

Predict genes expressed selectively in specific cell types

Bioconductor version: 3.23 · Package version: 1.38.0

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CellMapper")

Details

MaintainerBrad Nelms <bnelms.research@gmail.com>
AuthorBrad Nelms
LicenseArtistic-2.0
Downloads rank451
Source branchRELEASE_3_23
biocViewsGeneExpression, Microarray, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageCellMapper_1.38.0.tar.gz
Windows binary (x86_64)CellMapper_1.38.0.zip
macOS binary (arm64)CellMapper_1.38.0.tgz
macOS binary (x86_64)CellMapper_1.38.0.tgz
Dependencies

Depends: S4Vectors, methods

Imports: stats, utils

Suggests: CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub

Reverse dependencies

Depends On Me (1): CellMapperData