CAFE
Chromosmal Aberrations Finder in Expression data
Bioconductor version: 3.23 · Package version: 1.48.0
Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAFE")Details
| Maintainer | Sander Bollen <sander.h.bollen@gmail.com> |
| Author | Sander Bollen |
| License | GPL-3 |
| Downloads rank | 739 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CAFE_1.48.0.tar.gz |
| Windows binary (x86_64) | CAFE_1.48.0.zip |
| macOS binary (arm64) | CAFE_1.48.0.tgz |
| macOS binary (x86_64) | CAFE_1.48.0.tgz |
Dependencies
Depends: R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports: affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests: RUnit, BiocGenerics, BiocStyle