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AIMS

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: 3.23 · Package version: 1.44.0

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AIMS")

Details

MaintainerEric R Paquet <eric.r.paquet@gmail.com>
AuthorEric R. Paquet, Michael T. Hallett
LicenseArtistic-2.0
URLhttp://www.bci.mcgill.ca/AIMS
Downloads rank921
Source branchRELEASE_3_23
biocViewsClassification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageAIMS_1.44.0.tar.gz
Windows binary (x86_64)AIMS_1.44.0.zip
macOS binary (arm64)AIMS_1.44.0.tgz
macOS binary (x86_64)AIMS_1.44.0.tgz
Dependencies

Depends: R (>= 2.10), e1071, Biobase

Suggests: breastCancerVDX, hgu133a.db, RUnit, BiocGenerics

Reverse dependencies

Depends On Me (1): genefu