ADAMgui
Activity and Diversity Analysis Module Graphical User Interface
Bioconductor version: 3.23 · Package version: 1.28.0
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ADAMgui") Details
| Maintainer | Jose Luiz Rybarczyk Filho <jose.luiz@unesp.br> |
| Author | Giordano Bruno Sanches Seco [aut], André Luiz Molan [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths] |
| License | GPL (>= 2) |
| URL | TBA |
| Bug Reports | https://github.com/jrybarczyk/ADAMgui/issues |
| Downloads rank | 394 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneSetEnrichment, KEGG, Pathways, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ADAMgui_1.28.0.tar.gz |
| Windows binary (x86_64) | ADAMgui_1.28.0.zip |
| macOS binary (arm64) | ADAMgui_1.28.0.tgz |
| macOS binary (x86_64) | ADAMgui_1.28.0.tgz |
Dependencies
Depends: R (>= 3.6), stats, utils, methods, ADAM
Imports: GO.db (>= 3.5.0), dplyr (>= 0.7.6), shiny (>= 1.1.0), stringr (>= 1.3.1), stringi (>= 1.2.4), varhandle (>= 2.0.3), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), ggpubr (>= 0.1.8), ggsignif (>= 0.4.0), reshape2 (>= 1.4.3), RColorBrewer (>= 1.1-2), colorRamps (>= 2.3), DT (>= 0.4), data.table (>= 1.11.4), gridExtra (>= 2.3), shinyjs (>= 1.0), knitr, testthat