ADAM
ADAM: Activity and Diversity Analysis Module
Bioconductor version: 3.23 · Package version: 1.28.0
ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ADAM")Details
| Maintainer | Jose Luiz Rybarczyk Filho <jose.luiz@unesp.br> |
| Author | André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths] |
| License | GPL (>= 2) |
| System Requirements | C++11 |
| Downloads rank | 437 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, GeneSetEnrichment, KEGG, Microarray, Pathways, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ADAM_1.28.0.tar.gz |
| Windows binary (x86_64) | ADAM_1.28.0.zip |
| macOS binary (arm64) | ADAM_1.28.0.tgz |
| macOS binary (x86_64) | ADAM_1.28.0.tgz |
Dependencies
Depends: R (>= 3.5), stats, utils, methods
Imports: Rcpp (>= 0.12.18), GO.db (>= 3.6.0), KEGGREST (>= 1.20.2), knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4), stringr (>= 1.3.1), SummarizedExperiment (>= 1.10.1)
LinkingTo: Rcpp
Reverse dependencies
Depends On Me (1): ADAMgui