FlowSorted.CordBloodCombined.450k
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
Bioconductor version: 3.24 · Package version: 1.29.0
Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FlowSorted.CordBloodCombined.450k")Details
| Maintainer | Lucas A. Salas <lucas.a.salas.diaz@dartmouth.edu> |
| Author | Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb] |
| License | GPL-3 |
| URL | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k |
| Bug Reports | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues. |
| Downloads rank | 189 |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | FlowSorted.CordBloodCombined.450k_1.29.0.tar.gz |
Dependencies
Depends: R (>= 3.6), minfi (>= 1.21.2), ExperimentHub(>= 1.9.1)
Imports: SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, utils, AnnotationHub
Suggests: FlowSorted.Blood.EPIC, knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19