FlowSorted.Blood.EPIC
Illumina EPIC Data from Immunomagnetically Sorted Peripheral Blood Cells
Bioconductor version: 3.24 · Package version: 2.17.2
Raw data objects to be used for blood cell proportion estimation in minfi and similar packages. The FlowSorted.Blood.EPIC object is based on samples assayed by Brock Christensen and colleagues; for details see Salas et al. 2018. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FlowSorted.Blood.EPIC")Details
| Maintainer | Lucas A. Salas <lucas.a.salas.diaz@dartmouth.edu> |
| Author | Lucas A. Salas [aut, cre] (ORCID: <https://orcid.org/0000-0002-2279-4097>), Devin C. Koestler [aut], Rondi A. Butler [ctb], Helen M. Hansen [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Brock C. Christensen [ctb], Kasper D. Hansen [ctb] (Contributor to the original minfi implementation), Jean-Philippe Fortin [ctb] (Contributor to the original minfi implementation), Shan V. Andrews [ctb] (Contributor to the original minfi implementation), E. Andres Houseman [ctb] (Author of the original constrained-projection method), Andrew E. Jaffe [ctb] (Contributor to the original minfi implementation) |
| License | GPL-3 |
| URL | https://github.com/immunomethylomics/FlowSorted.Blood.EPIC |
| Bug Reports | https://github.com/immunomethylomics/FlowSorted.Blood.EPIC/issues |
| Downloads rank | 440 |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | FlowSorted.Blood.EPIC_2.17.2.tar.gz |
Dependencies
Depends: R (>= 4.6.0)
Imports: genefilter, quadprog, graphics, stats, utils, AnnotationHub, minfi (>= 1.21.2), ExperimentHub, SummarizedExperiment, S4Vectors, MatrixGenerics
Suggests: knitr, rmarkdown, FlowSorted.Blood.450k(>= 1.0.1), EpiDISH, FlowSorted.CordBloodNorway.450k, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19
Reverse dependencies
Imports Me (1): HiBED
Suggests Me (4): DMRcate, dnaEPICO, FlowSorted.CordBloodCombined.450k, wateRmelon