tidyomics
Easily install and load the tidyomics ecosystem
Bioconductor version: 3.24 · Package version: 1.9.0
The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tidyomics")Details
| Maintainer | Stefano Mangiola <mangiolastefano@gmail.com> |
| Author | Stefano Mangiola [aut, cre] (ORCID: <https://orcid.org/0000-0001-7474-836X>), Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>), William Hutchison [aut] (ORCID: <https://orcid.org/0009-0001-6242-4269>) |
| License | MIT + file LICENSE |
| URL | https://github.com/tidyomics/tidyomics |
| Bug Reports | https://github.com/tidyomics/tidyomics/issues |
| Downloads rank | 279 |
| Source branch | devel |
| biocViews | AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | tidyomics_1.9.0.tar.gz |
| Windows binary (x86_64) | tidyomics_1.9.0.zip |
| macOS binary (arm64) | tidyomics_1.9.0.tgz |
| macOS binary (x86_64) | tidyomics_1.9.0.tgz |
Dependencies
Depends: R (>= 4.2)
Imports: tidySummarizedExperiment, tidySingleCellExperiment, tidySpatialExperiment, tidyseurat, plyranges, purrr, rlang, stringr, cli
Suggests: utils, tidyr, dplyr, tibble, ggplot2, mockr (>= 0.2.0), knitr (>= 1.41), rmarkdown (>= 2.20), testthat (>= 3.1.6), nullranges, tidybulk, plyinteractions