plyranges
A fluent interface for manipulating GenomicRanges
Bioconductor version: 3.24 · Package version: 1.33.2
A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyranges")Details
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| Author | Stuart Lee [aut] (ORCID: <https://orcid.org/0000-0003-1179-8436>), Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb] (ORCID: <https://orcid.org/0000-0003-1000-1579>), Pierre-Paul Axisa [ctb], Stevie Pederson [ctb], Michael Love [ctb, cre] |
| License | Artistic-2.0 |
| URL | https://tidyomics.github.io/plyranges |
| Bug Reports | https://github.com/tidyomics/plyranges |
| Downloads rank | 1653 |
| Source branch | devel |
| biocViews | Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | plyranges_1.33.2.tar.gz |
| Windows binary (x86_64) | plyranges_1.33.2.zip |
| macOS binary (arm64) | plyranges_1.33.2.tgz |
| macOS binary (x86_64) | plyranges_1.33.2.tgz |
Dependencies
Depends: R (>= 3.5), BiocGenerics, IRanges (>= 2.12.0), GenomicRanges (>= 1.28.4), dplyr
Imports: methods, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, Seqinfo, Rsamtools, S4Vectors (>= 0.23.10), utils
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2
Reverse dependencies
Depends On Me (1): plyinteractions
Imports Me (17): BOBaFIT, BUSpaRse, cfDNAPro, Damsel, fluentGenomics, GenomicCoordinates, GenomicPlot, InPAS, katdetectr, multicrispr, MutSeqR, nullranges, plotgardener, profileplyr, splicelogic, STADyUM, tidyomics
Suggests Me (9): dbSequence, EpiCompare, extraChIPs, memes, rigvf, savingBiocObjects, svaNUMT, svaRetro, tidyCoverage