snpStats
SnpMatrix and XSnpMatrix classes and methods
Bioconductor version: 3.24 · Package version: 1.63.0
Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("snpStats")Details
| Maintainer | David Clayton <dc208@cam.ac.uk> |
| Author | David Clayton <dc208@cam.ac.uk> |
| License | GPL-3 |
| Downloads rank | 2933 |
| Source branch | devel |
| biocViews | GeneticVariability, Microarray, SNP, Software |
Documentation
- Data input
- Fst
- Imputation and meta-analysis
- LD statistics
- Principal components analysis
- snpMatrix-differences
- snpStats introduction
- TDT tests
Download
Follow the installation instructions to use this package in your R session.
| Source package | snpStats_1.63.0.tar.gz |
| Windows binary (x86_64) | snpStats_1.63.0.zip |
| macOS binary (arm64) | snpStats_1.63.0.tgz |
| macOS binary (x86_64) | snpStats_1.63.0.tgz |
Dependencies
Depends: R (>= 2.10.0), survival, Matrix, methods
Imports: graphics, grDevices, stats, utils, BiocGenerics
Suggests: hexbin
Reverse dependencies
Depends On Me (1): MAGAR
Imports Me (12): cardelino, dartR.base, DExMA, GenomicTools.fileHandler, gpcp, GWASbyCluster, gwascat, martini, RVS, scoreInvHap, SNPkit, TriadSim
Suggests Me (14): adjclust, crlmm, dartR, dartR.popgen, genio, GenomicFiles, GWASTools, ldblock, omicRexposome, omicsPrint, pegas, RcppDPR, statgenGWAS, VariantAnnotation