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procoil

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: 3.24 · Package version: 2.41.0

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("procoil")

Details

MaintainerUlrich Bodenhofer <ulrich@bodenhofer.com>
AuthorUlrich Bodenhofer [aut, cre]
LicenseGPL (>= 2)
URLhttps://github.com/UBod/procoil
Downloads rank635
Source branchdevel
biocViewsClassification, Proteomics, Software, SupportVectorMachine

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageprocoil_2.41.0.tar.gz
Windows binary (x86_64)procoil_2.41.0.zip
macOS binary (arm64)procoil_2.41.0.tgz
macOS binary (x86_64)procoil_2.41.0.tgz
Dependencies

Depends: R (>= 3.3.0), kebabs

Imports: methods, stats, graphics, S4Vectors, Biostrings, utils

Suggests: knitr