pram

Pooling RNA-seq datasets for assembling transcript models

Bioconductor version: 3.24 · Package version: 1.29.0

Publicly available RNA-seq data is routinely used for retrospective analysis to elucidate new biology. Novel transcript discovery enabled by large collections of RNA-seq datasets has emerged as one of such analysis. To increase the power of transcript discovery from large collections of RNA-seq datasets, we developed a new R package named Pooling RNA-seq and Assembling Models (PRAM), which builds transcript models in intergenic regions from pooled RNA-seq datasets. This package includes functions for defining intergenic regions, extracting and pooling related RNA-seq alignments, predicting, selected, and evaluating transcript models.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pram")