h5vc
Managing alignment tallies using a hdf5 backend
Bioconductor version: 3.24 · Package version: 2.47.0
This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("h5vc")Details
| Maintainer | Paul Theodor Pyl <paul.theodor.pyl@gmail.com> |
| Author | Paul Theodor Pyl |
| License | GPL (>= 3) |
| System Requirements | GNU make |
| Downloads rank | 888 |
| Source branch | devel |
| biocViews | Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | h5vc_2.47.0.tar.gz |
| Windows binary (x86_64) | h5vc_2.47.0.zip |
| macOS binary (arm64) | h5vc_2.47.0.tgz |
| macOS binary (x86_64) | h5vc_2.47.0.tgz |
Dependencies
Depends: grid, gridExtra, ggplot2
Imports: rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools (>= 2.13.1), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
LinkingTo: Rhtslib (>= 1.99.1)
Suggests: knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics, rmarkdown
Reverse dependencies
Suggests Me (1): h5vcData