betterChromVAR

Improved ChromVAR (Chromatin Variation Across Regions)

Bioconductor version: 3.24 · Package version: 1.1.10

A much faster analytical implementation of chromVAR, with additional features, used to infer TF activity from (bulk or single-cell) ATAC-seq data and motif annotations (or binding probabilities). The package also includes the CVnorm normalization method based on the chromVAR logic.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("betterChromVAR")