apeglm
Approximate posterior estimation for GLM coefficients
Bioconductor version: 3.24 · Package version: 1.35.0
apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("apeglm")Details
| Maintainer | Anqi Zhu <anqizhu@live.unc.edu> |
| Author | Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut] |
| License | GPL-2 |
| Downloads rank | 6723 |
| Source branch | devel |
| biocViews | Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | apeglm_1.35.0.tar.gz |
| Windows binary (x86_64) | apeglm_1.35.0.zip |
| macOS binary (arm64) | apeglm_1.35.0.tgz |
| macOS binary (x86_64) | apeglm_1.35.0.tgz |
Dependencies
Imports: emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp
LinkingTo: Rcpp, RcppEigen, RcppNumerical
Reverse dependencies
Depends On Me (1): rnaseqGene
Imports Me (6): airpart, DiffBind, ERSSA, phantasus, Rmmquant, TEKRABber
Suggests Me (11): bambu, dar, debrowser, DeeDeeExperiment, DESeq2, EMMA, extraChIPs, fishpond, NanoporeRNASeq, RNAseqQC, terapadog