alabaster.files
Wrappers to Save Common File Formats
Bioconductor version: 3.24 · Package version: 1.11.1
Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.files") Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | MIT + file LICENSE |
| Downloads rank | 321 |
| Source branch | devel |
| biocViews | DataImport, DataRepresentation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | alabaster.files_1.11.1.tar.gz |
| Windows binary (x86_64) | alabaster.files_1.11.1.zip |
| macOS binary (arm64) | alabaster.files_1.11.1.tgz |
| macOS binary (x86_64) | alabaster.files_1.11.1.tgz |
Dependencies
Depends: alabaster.base
Imports: methods, S4Vectors, BiocGenerics, Rsamtools
Suggests: BiocStyle, rmarkdown, knitr, testthat, VariantAnnotation, rtracklayer, Biostrings