SimiCviz

Visualization Tools for Gene Regulatory Network Analysis

Bioconductor version: 3.24 · Package version: 0.99.2

Visualization and export utilities for SimiC and SimiCPipeline outputs. The package focuses on importing SimiC-style results (e.g., weights, AUC metrics) from pickle/CSV files, processing and generating publication-ready plots (networks, heatmaps, distributions) and tables saved into a reproducible, ordered directory hierarchy.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimiCviz")

Details

Maintainer	Irene Marín-Goñi <imarin.4@alumni.unav.es>
Author	Irene Marín-Goñi [aut, cre] (ORCID: <https://orcid.org/0000-0002-5060-0712>)
License	MIT + file LICENSE
URL	https://github.com/ML4BM-Lab/SimiCviz
Bug Reports	https://github.com/ML4BM-Lab/SimiCviz/issues
System Requirements	Python (>= 3.8)
Downloads rank	31
Source branch	devel
biocViews	GeneRegulation, Network, NetworkInference, SingleCell, Software, Visualization

Documentation

SimiCviz: Visualization and Analysis of Gene Regulatory Networks

Download

Follow the installation instructions to use this package in your R session.

Source package	SimiCviz_0.99.2.tar.gz
Windows binary (x86_64)	SimiCviz_0.99.2.zip
macOS binary (arm64)	SimiCviz_0.99.2.tgz
macOS binary (x86_64)	SimiCviz_0.99.2.tgz

Dependencies

Depends: R (>= 4.5)

Imports: methods, stats, BiocParallel, viridisLite, utils, Matrix, graphics, SummarizedExperiment, colorspace, gridExtra, ggplot2, dplyr, tibble, tidyr, reshape2, scales, reticulate (>= 1.45.0)

Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)