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SUITOR

Selecting the number of mutational signatures through cross-validation

Bioconductor version: 3.24 · Package version: 1.15.2

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SUITOR")

Details

MaintainerBill Wheeler <wheelerb@imsweb.com>
AuthorDongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]
LicenseGPL-2
Bug Reportshttps://github.com/wheelerb/SUITOR/issues
Downloads rank313
Source branchdevel
biocViewsGenetics, Software, SomaticMutation

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageSUITOR_1.15.2.tar.gz
Windows binary (x86_64)SUITOR_1.15.2.zip
macOS binary (arm64)SUITOR_1.15.2.tgz
macOS binary (x86_64)SUITOR_1.15.2.tgz
Dependencies

Depends: R (>= 4.2.0)

Imports: stats, utils, graphics, ggplot2, BiocParallel

Suggests: devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown