STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
Bioconductor version: 3.24 · Package version: 2.25.0
The STRINGdb package provides an R interface to STRING, a protein-protein interaction database and functional enrichment analysis tool (https://string-db.org).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("STRINGdb")Details
| Maintainer | Damian Szklarczyk <damian.szklarczyk@imls.uzh.ch> |
| Author | Andrea Franceschini <andrea.franceschini@isb-sib.ch> |
| License | GPL-2 |
| Downloads rank | 3958 |
| Source branch | devel |
| biocViews | Network, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | STRINGdb_2.25.0.tar.gz |
| Windows binary (x86_64) | STRINGdb_2.25.0.zip |
| macOS binary (arm64) | STRINGdb_2.25.0.tgz |
| macOS binary (x86_64) | STRINGdb_2.25.0.tgz |
Dependencies
Depends: R (>= 2.14.0)
Imports: png, sqldf, plyr, igraph, httr, methods, RColorBrewer, gplots, hash, plotrix
Suggests: RUnit, BiocGenerics
Reverse dependencies
Depends On Me (1): PPInfer
Imports Me (8): DeSciDe, GeDi, GExPipe, IMMAN, netZooR, RITAN, TraianProt, XINA
Suggests Me (9): epiNEM, GeneNetworkBuilder, levi, martini, netSmooth, PCAN, protti, scGraphVerse, TDbasedUFEadv