Oscope

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Bioconductor version: 3.24 · Package version: 1.43.0

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Oscope")