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MsBackendMassbank

Mass Spectrometry Data Backend for MassBank record Files

Bioconductor version: 3.24 · Package version: 1.21.0

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMassbank")

Details

MaintainerRforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>
AuthorRforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Stravs [ctb]
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MsBackendMassbank
Bug Reportshttps://github.com/RforMassSpectrometry/MsBackendMassbank/issues
Downloads rank409
Source branchdevel
biocViewsDataImport, Infrastructure, MassSpectrometry, Metabolomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMsBackendMassbank_1.21.0.tar.gz
Windows binary (x86_64)MsBackendMassbank_1.21.0.zip
macOS binary (arm64)MsBackendMassbank_1.21.0.tgz
macOS binary (x86_64)MsBackendMassbank_1.21.0.tgz
Dependencies

Depends: R (>= 4.0), Spectra (>= 1.21.5)

Imports: BiocParallel, S4Vectors, IRanges, methods, ProtGenerics (>= 1.35.3), MsCoreUtils, DBI, utils

Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, rmarkdown