HTSFilter
Filter replicated high-throughput transcriptome sequencing data
Bioconductor version: 3.24 · Package version: 1.53.0
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HTSFilter")Details
| Maintainer | Andrea Rau <andrea.rau@inrae.fr> |
| Author | Andrea Rau [cre, aut] (ORCID: <https://orcid.org/0000-0001-6469-488X>), Melina Gallopin [ctb], Gilles Celeux [ctb], Florence Jaffrézic [ctb] |
| License | Artistic-2.0 |
| Downloads rank | 826 |
| Source branch | devel |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HTSFilter_1.53.0.tar.gz |
| Windows binary (x86_64) | HTSFilter_1.53.0.zip |
| macOS binary (arm64) | HTSFilter_1.53.0.tgz |
| macOS binary (x86_64) | HTSFilter_1.53.0.tgz |
Dependencies
Depends: R (>= 4.0.0)
Imports: edgeR, DESeq2, BiocParallel, Biobase, utils, stats, grDevices, graphics, methods