GenomicDataCommons
NIH / NCI Genomic Data Commons Access
Bioconductor version: 3.24 · Package version: 1.37.0
Programmatically access the NIH / NCI Genomic Data Commons RESTful service.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")Details
| Maintainer | Sean Davis <seandavi@gmail.com> |
| Author | Martin Morgan [aut], Sean Davis [aut, cre], Marcel Ramos [ctb] |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/GenomicDataCommons, http://github.com/Bioconductor/GenomicDataCommons, http://bioconductor.github.io/GenomicDataCommons/ |
| Bug Reports | https://github.com/Bioconductor/GenomicDataCommons/issues/new |
| Downloads rank | 1544 |
| Source branch | devel |
| biocViews | DataImport, Sequencing, Software |
Documentation
- The GenomicDataCommons Package
- Questions and answers from over the years
- Working with simple somatic mutations
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicDataCommons_1.37.0.tar.gz |
| Windows binary (x86_64) | GenomicDataCommons_1.37.0.zip |
| macOS binary (arm64) | GenomicDataCommons_1.37.0.tgz |
| macOS binary (x86_64) | GenomicDataCommons_1.37.0.tgz |
Dependencies
Depends: R (>= 4.1.0)
Imports: stats, httr, xml2, jsonlite, utils, rlang, readr, GenomicRanges, IRanges, dplyr, rappdirs, tibble, tidyr
Suggests: BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools, BiocParallel, TxDb.Hsapiens.UCSC.hg38.knownGene, VariantAnnotation, maftools, R.utils, data.table