GWASTools
Tools for Genome Wide Association Studies
Bioconductor version: 3.24 · Package version: 1.59.0
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GWASTools")Details
| Maintainer | Stephanie M. Gogarten <sdmorris@uw.edu> |
| Author | Stephanie M. Gogarten [aut], Cathy Laurie [aut], Tushar Bhangale [aut], Matthew P. Conomos [aut], Cecelia Laurie [aut], Michael Lawrence [aut], Caitlin McHugh [aut], Ian Painter [aut], Xiuwen Zheng [aut], Jess Shen [aut], Rohit Swarnkar [aut], Adrienne Stilp [aut], Sarah Nelson [aut], David Levine [aut], Sonali Kumari [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Stephanie M. Gogarten [cre] |
| License | Artistic-2.0 |
| URL | https://github.com/smgogarten/GWASTools |
| Downloads rank | 1240 |
| Source branch | devel |
| biocViews | GeneticVariability, Microarray, QualityControl, SNP, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GWASTools_1.59.0.tar.gz |
| Windows binary (x86_64) | GWASTools_1.59.0.zip |
| macOS binary (arm64) | GWASTools_1.59.0.tgz |
| macOS binary (x86_64) | GWASTools_1.59.0.tgz |
Dependencies
Depends: Biobase
Imports: graphics, stats, utils, methods, gdsfmt, DBI, RSQLite, GWASExactHW, DNAcopy, survival, sandwich, lmtest, logistf, quantsmooth, data.table
Suggests: ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation, parallel, BiocStyle, knitr
Reverse dependencies
Depends On Me (3): GWASdata, mBPCR, snplinkage
Imports Me (2): GENESIS, gwasurvivr
Suggests Me (1): podkat