CopyNumberPlots
Create Copy-Number Plots using karyoploteR functionality
Bioconductor version: 3.24 · Package version: 1.29.0
CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CopyNumberPlots")Details
| Maintainer | Bernat Gel <bgel@igtp.cat> |
| Author | Bernat Gel <bgel@igtp.cat> and Miriam Magallon <mmagallon@igtp.cat> |
| License | Artistic-2.0 |
| URL | https://github.com/bernatgel/CopyNumberPlots |
| Bug Reports | https://github.com/bernatgel/CopyNumberPlots/issues |
| Downloads rank | 506 |
| Source branch | devel |
| biocViews | CopyNumberVariation, Coverage, DNASeq, DataImport, OneChannel, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CopyNumberPlots_1.29.0.tar.gz |
| Windows binary (x86_64) | CopyNumberPlots_1.29.0.zip |
| macOS binary (arm64) | CopyNumberPlots_1.29.0.tgz |
| macOS binary (x86_64) | CopyNumberPlots_1.29.0.tgz |
Dependencies
Depends: R (>= 3.6), karyoploteR
Imports: regioneR, IRanges, Rsamtools, SummarizedExperiment, VariantAnnotation, methods, stats, GenomeInfoDb, GenomicRanges, cn.mops, rhdf5, utils
Suggests: BiocStyle, knitr, rmarkdown, panelcn.mops, BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy, testthat