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ChemmineR

Cheminformatics Toolkit for R

Bioconductor version: 3.24 · Package version: 3.65.0

ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChemmineR")

Details

MaintainerThomas Girke <thomas.girke@ucr.edu>
AuthorY. Eddie Cao, Kevin Horan, Tyler Backman, Thomas Girke
LicenseArtistic-2.0
URLhttps://github.com/girke-lab/ChemmineR
System RequirementsGNU make
Downloads rank1457
Source branchdevel
biocViewsBiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageChemmineR_3.65.0.tar.gz
Windows binary (x86_64)ChemmineR_3.65.0.zip
macOS binary (arm64)ChemmineR_3.65.0.tgz
macOS binary (x86_64)ChemmineR_3.65.0.tgz
Dependencies

Depends: R (>= 2.10.0), methods

Imports: rjson, graphics, stats, RCurl, DBI, digest, BiocGenerics, Rcpp (>= 0.11.0), ggplot2, grid, gridExtra, png, base64enc, DT, rsvg, jsonlite, stringi

LinkingTo: Rcpp, BH

Suggests: RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL, BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs, png, rmarkdown, BiocManager, bibtex, codetools

Enhances: ChemmineOB

Reverse dependencies

Depends On Me (3): ChemmineDrugs, eiR, fmcsR

Imports Me (9): bioassayR, chemodiv, CompoundDb, customCMPdb, eiR, fmcsR, MetID, RMassBank, SubtypeDrug

Suggests Me (2): ChemmineOB, xnet