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ADAMgui

Activity and Diversity Analysis Module Graphical User Interface

Bioconductor version: 3.24 · Package version: 1.29.0

ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ADAMgui")

Details

MaintainerJose Luiz Rybarczyk Filho <jose.luiz@unesp.br>
AuthorGiordano Bruno Sanches Seco [aut], André Luiz Molan [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]
LicenseGPL (>= 2)
URLTBA
Bug Reportshttps://github.com/jrybarczyk/ADAMgui/issues
Downloads rank394
Source branchdevel
biocViewsGeneSetEnrichment, KEGG, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageADAMgui_1.29.0.tar.gz
Windows binary (x86_64)ADAMgui_1.29.0.zip
macOS binary (arm64)ADAMgui_1.29.0.tgz
macOS binary (x86_64)ADAMgui_1.29.0.tgz
Dependencies

Depends: R (>= 3.6), stats, utils, methods, ADAM

Imports: GO.db (>= 3.5.0), dplyr (>= 0.7.6), shiny (>= 1.1.0), stringr (>= 1.3.1), stringi (>= 1.2.4), varhandle (>= 2.0.3), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), ggpubr (>= 0.1.8), ggsignif (>= 0.4.0), reshape2 (>= 1.4.3), RColorBrewer (>= 1.1-2), colorRamps (>= 2.3), DT (>= 0.4), data.table (>= 1.11.4), gridExtra (>= 2.3), shinyjs (>= 1.0), knitr, testthat

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