ADAM

ADAM: Activity and Diversity Analysis Module

Bioconductor version: 3.24 · Package version: 1.29.0

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ADAM")

Details

Maintainer	Jose Luiz Rybarczyk Filho <jose.luiz@unesp.br>
Author	André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]
License	GPL (>= 2)
System Requirements	C++11
Downloads rank	437
Source branch	devel
biocViews	GeneExpression, GeneSetEnrichment, KEGG, Microarray, Pathways, Software

Documentation

ADAM: Activity and Diversity Analysis Module

Download

Follow the installation instructions to use this package in your R session.

Source package	ADAM_1.29.0.tar.gz
Windows binary (x86_64)	ADAM_1.29.0.zip
macOS binary (arm64)	ADAM_1.29.0.tgz
macOS binary (x86_64)	ADAM_1.29.0.tgz

Dependencies

Depends: R (>= 3.5), stats, utils, methods

Imports: Rcpp (>= 0.12.18), GO.db (>= 3.6.0), KEGGREST (>= 1.20.2), knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4), stringr (>= 1.3.1), SummarizedExperiment (>= 1.10.1)

LinkingTo: Rcpp

Suggests: testthat, rmarkdown, BiocStyle

Reverse dependencies

Depends On Me (1): ADAMgui