AHEnsDbs

DOI: 10.18129/B9.bioc.AHEnsDbs    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AHEnsDbs.

EnsDbs for AnnotationHub

Bioconductor version: 3.9

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API.

Author: Johannes Rainer

Maintainer: Johannes Rainer <johannes.rainer at eurac.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHEnsDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHEnsDbs")

 

HTML	R Script	Provide EnsDb databases for AnnotationHub
PDF		Reference Manual

Details

biocViews	AnnotationData, AnnotationHub, Coverage, DataImport, Sequencing
Version	1.0.9
License	Artistic-2.0
Depends	R (>= 3.4), methods, ensembldb(>= 1.99.10)
Imports	AnnotationHubData(>= 1.5.24)
LinkingTo
Suggests	BiocStyle, knitr, AnnotationHub(>= 2.7.13)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AHEnsDbs_1.0.9.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	https://bioconductor.org/packages/AHEnsDbs/
Package Downloads Report	Download Stats