gQTLBase

DOI: 10.18129/B9.bioc.gQTLBase    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gQTLBase.

gQTLBase: infrastructure for eQTL, mQTL and similar studies

Bioconductor version: 3.8

Infrastructure for eQTL, mQTL and similar studies.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gQTLBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLBase")

 

HTML	R Script	gQTLBase infrastructure for eQTL archives
PDF		Reference Manual

Details

biocViews	Software
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	Artistic-2.0
Depends
Imports	GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment
LinkingTo
Suggests	geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	geuvStore2, gQTLstats, yriMulti
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gQTLBase_1.14.0.tar.gz
Windows Binary	gQTLBase_1.14.0.zip
Mac OS X 10.11 (El Capitan)	gQTLBase_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gQTLBase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gQTLBase
Package Short Url	http://bioconductor.org/packages/gQTLBase/
Package Downloads Report	Download Stats