ampliQueso

DOI: 10.18129/B9.bioc.ampliQueso    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ampliQueso.

Analysis of amplicon enrichment panels

Bioconductor version: 3.8

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ampliQueso")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ampliQueso")

 

PDF	R Script	ampliQueso primer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version	1.20.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL-2
Depends	R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports	edgeR, DESeq, samr
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ampliQueso_1.20.0.tar.gz
Windows Binary	ampliQueso_1.20.0.zip
Mac OS X 10.11 (El Capitan)	ampliQueso_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ampliQueso
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ampliQueso
Package Short Url	http://bioconductor.org/packages/ampliQueso/
Package Downloads Report	Download Stats