compareCoverages {ampliQueso} | R Documentation |
Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region.
compareCoverages(ch, st, en, group, t1, t2, measure="DA", covdesc="covdesc")
ch |
Chromosome of the region of interest |
st |
Start of the region of interest |
en |
End of the region of interest |
group |
Name of the attribute/group in the experimental description (i.e. covdesc) |
t1 |
First name of the attribute used for grouping |
t2 |
Another name of the attribute used for grouping |
measure |
Method of comparison for the coverages in the selected genomic region |
covdesc |
Covdesc-like data frame - BAM files are read from row names |
A single camel value with the results of comparison.
Alicja Szabelska, Marek Wiewiorka, Michal Okoniewski