Workflow Package: proteomics

Mass spectrometry and proteomics data analysis

Bioconductor version: 3.7

This workflow illustrates R / Bioconductor infrastructure for proteomics. Topics covered focus on support for open community-driven formats for raw data and identification results, packages for peptide-spectrum matching, data processing and analysis.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proteomics")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("proteomics")

 

HTML

R Script

An R/Bioc proteomics workflow

Details

biocViews	ProteomicsWorkflow, Workflow
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.3.0), mzR, mzID, MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata, MSGFplus, rols, hpar
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://www.bioconductor.org/help/workflows/proteomics/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report