Workflow Package: eQTL

Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x

Bioconductor version: 3.7

This workflow focuses on searches for eQTL in cis, so that DNA variants local to the gene assayed for expression are tested for association.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eQTL")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("eQTL")

 

HTML

R Script

Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x

Details

biocViews	GenomicVariantsWorkflow, Workflow
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.3.0), GGdata, GGtools, GenomeInfoDb, S4Vectors, SNPlocs.Hsapiens.dbSNP144.GRCh37, bibtex, biglm, data.table, doParallel, foreach, knitcitations, lumi, lumiHumanAll.db, parallel, rmeta, scatterplot3d, snpStats, grid, yri1kgv
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://www.bioconductor.org/help/workflows/eQTL/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report