Workflow Package: EGSEA123

Easy and efficient ensemble gene set testing with EGSEA

Bioconductor version: 3.7

R package that supports the F1000Research workflow article `Easy and efficient ensemble gene set testing with EGSEA', Alhamdoosh et al. (2017).

Author: Monther Alhamdoosh, Charity Law, Luyi Tian, Julie Sheridan, Milica Ng and Matthew Ritchie

Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EGSEA123")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("EGSEA123")

 

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R Script

Easy and efficient ensemble gene set testing with EGSEA

Details

biocViews	GeneExpressionWorkflow, Workflow
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.4.0), EGSEA(>= 1.5.2), limma, edgeR, illuminaio
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://www.bioconductor.org/help/workflows/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report