ldblock

DOI: 10.18129/B9.bioc.ldblock    

data structures for linkage disequilibrium measures in populations

Bioconductor version: Release (3.6)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ldblock")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

 

PDF	R Script	LD block import and manipulation
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.8.1
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.1), methods, Homo.sapiens
Imports	Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles(>= 1.13.6)
LinkingTo
Suggests	RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	gQTLstats
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ldblock_1.8.1.tar.gz
Windows Binary	ldblock_1.8.1.zip
Mac OS X 10.11 (El Capitan)	ldblock_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ldblock
Package Short Url	http://bioconductor.org/packages/ldblock/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive