gQTLstats

DOI: 10.18129/B9.bioc.gQTLstats    

gQTLstats: computationally efficient analysis for eQTL and allied studies

Bioconductor version: Release (3.6)

computationally efficient analysis of eQTL, mQTL, dsQTL, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gQTLstats")

Documentation

HTML	R Script	gQTLstats: statistics for genetics of genomic features
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.10.1
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	Artistic-2.0
Depends	R (>= 3.1.0)
Imports	methods, snpStats, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicFiles, GenomicRanges, SummarizedExperiment, VariantAnnotation, Biobase, BatchJobs, gQTLBase, limma, mgcv, dplyr, AnnotationDbi, GenomicFeatures, ggplot2, reshape2, doParallel, foreach, ffbase, BBmisc, beeswarm, HardyWeinberg, graphics, stats, utils, shiny, ldblock, plotly, erma, ggbeeswarm
LinkingTo
Suggests	geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio, BiocStyle, Homo.sapiens, RUnit, multtest, gwascat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	gwascat
Suggests Me	yriMulti
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gQTLstats_1.10.1.tar.gz
Windows Binary	gQTLstats_1.10.1.zip
Mac OS X 10.11 (El Capitan)	gQTLstats_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gQTLstats
Package Short Url	http://bioconductor.org/packages/gQTLstats/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive