tweeDEseq
RNA-seq data analysis using the Poisson-Tweedie family of distributions
Bioconductor version: 3.24 · Package version: 1.59.0
Differential expression analysis of RNA-seq using the Poisson-Tweedie (PT) family of distributions. PT distributions are described by a mean, a dispersion and a shape parameter and include Poisson and NB distributions, among others, as particular cases. An important feature of this family is that, while the Negative Binomial (NB) distribution only allows a quadratic mean-variance relationship, the PT distributions generalizes this relationship to any orde.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tweeDEseq") Details
| Maintainer | Dolors Pelegri-Siso <dolors.pelegri@isglobal.org> |
| Author | Dolors Pelegri-Siso [aut, cre] (ORCID: <https://orcid.org/0000-0002-5993-3003>), Juan R. Gonzalez [aut] (ORCID: <https://orcid.org/0000-0003-3267-2146>), Mikel Esnaola [aut], Robert Castelo [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/isglobal-brge/tweeDEseq/ |
| Bug Reports | https://github.com/isglobal-brge/tweeDEseq/issues |
| Downloads rank | 565 |
| Source branch | devel |
| biocViews | DNASeq, DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | tweeDEseq_1.59.0.tar.gz |
| Windows binary (x86_64) | tweeDEseq_1.59.0.zip |
| macOS binary (arm64) | tweeDEseq_1.59.0.tgz |
| macOS binary (x86_64) | tweeDEseq_1.59.0.tgz |
Dependencies
Depends: R (>= 4.3.0)
Imports: Rcpp (>= 1.0.10), MASS, limma, edgeR, parallel, cqn, grDevices, graphics, stats, utils
LinkingTo: Rcpp
Suggests: tweeDEseqCountData, xtable
Reverse dependencies
Imports Me (1): ptmixed