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cqn

Conditional quantile normalization

Bioconductor version: 3.24 · Package version: 1.59.0

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cqn")

Details

MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
AuthorJean (Zhijin) Wu, Kasper Daniel Hansen
LicenseArtistic-2.0
Downloads rank770
Source branchdevel
biocViewsDifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecqn_1.59.0.tar.gz
Windows binary (x86_64)cqn_1.59.0.zip
macOS binary (arm64)cqn_1.59.0.tgz
macOS binary (x86_64)cqn_1.59.0.tgz
Dependencies

Depends: R (>= 2.10.0), mclust

Imports: splines, graphics, nor1mix, stats, quantreg

Suggests: scales, edgeR

Reverse dependencies

Depends On Me (1): KnowSeq

Imports Me (2): GeoTcgaData, tweeDEseq