methylPipe
Base resolution DNA methylation data analysis
Bioconductor version: 3.24 · Package version: 1.47.0
Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methylPipe")Details
| Maintainer | Mattia Furlan <mattia.furlan@iit.it> |
| Author | Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre] |
| License | GPL(>=2) |
| Downloads rank | 655 |
| Source branch | devel |
| biocViews | Coverage, DNAMethylation, MethylSeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | methylPipe_1.47.0.tar.gz |
| Windows binary (x86_64) | methylPipe_1.47.0.zip |
| macOS binary (arm64) | methylPipe_1.47.0.tgz |
| macOS binary (x86_64) | methylPipe_1.47.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment (>= 0.2.0), Rsamtools
Imports: marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings, parallel, data.table, Seqinfo, S4Vectors
Suggests: BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR